Not likely, The US government will not allow Boeing to go bust anymore than the EU will allow that to happen to EADS/Airbus.
The accusation is not at all about spying, despite what the press is reporting. If the Air Force gets to pushy with their punishment, Boeing has already told the them to go pound sand and use the Lockmart Rocket for all of it's needs, which can't do all of the missions. Boeing will take a public spanking for political reasons, but in the end, will come out smiling. Watch closely