Weird news indeed because JAA has just celebrated an agreement with Portuguese EuroAtlantic Airways to share planes, crews, etc last days.
AFAIK the JAA has passed all audits by european/portuguese CAA's and EASA and HS-JAK -200's has been based and flying out of Lisbon on a very regular basis since last weeks(for portuguese carriers), with all "itens" in accordance with the shiny european strong & demanding rules.