Adam,
Flybe's treatment of crew has got infinately better with the new Scheduling Agreement. It is fair to say that ex BACon crews may be less protected however the majority of Flybe crews, as I understand it, are much more protected than ever before with much reduced disruption.
It is true that the 145 fleet suffers at present however this is in part due to the movement of crews and the number of aircraft operated from bases where there is currently no crew. This will reduce over the coming few months and should result in a much calmer situation.