I think that the clue is here:
It looks to me as if this has a) created some Outlook folders and b) some rules to filter spam.
Being a computer program, it is therefore entirely reasonable that the emails you want should be in "junk" and the spam let through. Just rename "junk" to "important stuff" and make sure you delete everything else. Hey presto! problem solved!
Sorry, couldn't resist.
It does look like spitoon is right about the order of rule processing.
SD