City University's Air Transport Engineering degree includes two modules called Maintenance Technology and Maintenance Planning, including MSG3. Also included are modules on Systems Safety and Reliability and Airline Economics. This course has been around for a long time with support, originally, from BEA/BOAC and later BA. It was designed directly for airline engineers.
http://www.city.ac.uk/ugrad/engineer...transport.html
The standard Aeronautical Engineering programme includes the Maintenance modules as options.
From this year both courses now offer an Aircraft Operations and Performance elective which covers day to day airline planning and operations.
There is also a degree which includes a full frozen ATPL - Air Transport Operations.