Well we have always been Thomsonfly.com at our base, but I agree and we have said this to each other, pax will become very confused!
Our aircraft have always had Thomsonfly.com on them, but when you visit the website, its our flights that you can book so no problem there!
But obviously if you flew from Man, Lgw etc on an IT flight, then the aircraft would say exactly the same and the website would have no relevence!
From what I can gather though I think the website/s will be merged soon but even then I dont think that pax will be able to book flights from/to all destinations. Maybe we should have just had Thomson.com/co.uk on everything then one website where you choose what you want eg flights, package, hotels, etc?
I suppose only time will tell in the end whether it works or not! In the meantime..........
[Confused?