Hello Robbie,
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...when you disconnect the autopilot it stays on the ECAM autopilot disconnected, once landed the FMGC goes blank so it resets itself right?
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In the real plane, one would normally take out the autopilot by pressing the instinctive red push button on the joystick. This results in a loud chime and master caution light flashing away. To stop this you press the same push button on the joystick again. This is normally done in quick succession to try to avoid the alarm altogether, but you always hear at least 2 chimes anyway. In MSFS, you only need to press 'Z' once I believe to take out the autopilot and cancel the warning.
If you take out the autopilot by pushing the A/P button on the MCP (Mode Control Panel) in front of you, then you will see 'A/P disconnected' on the ECAM display and you would have to go through the ECAM drill or 'ECAM actions' to clear it. Done simply by pressing the CLR button on the ECAM control panel a few times. This would be the incorrect way of switching off the autopilot.
So, I think the answer to all your questions is to read up on clearing ECAM messages. I'm guessing you're using Wilco. It's a good model with good documentation.