Hi NIKITAcc.
From what i know, with EK you can decline the visa. However, with EY you'll just be randomly selected to get the visa (friends who work there have just received a notice to let them know that on a particular day they will be going to the US Embassy to apply for their crew visa).
I suppose that if you check their requirements on their recruitment website, and it doesn't say anything about having an unrestricted passport, then turn up to the assessment day. If they ask you a question on the assessment day about your passport issue, then just be honest and let them know.
Good luck!